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docs:deskew [2024/11/27 00:49]
Jon Daniels ["Deskewing" (Reslicing) in Micro-Manager 2.0 Image Processor] 		docs:deskew [2025/12/02 23:04] (current)
Jon Daniels [Related Resources]
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 Important: as of Nov 2024 the MM2.0 plugin uses a different convention than the MM1.4 datasets for the z_step parameter.  See https://github.com/micro-manager/micro-manager/issues/1984. Important: as of Nov 2024 the MM2.0 plugin uses a different convention than the MM1.4 datasets for the z_step parameter.  See https://github.com/micro-manager/micro-manager/issues/1984.
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 +===== Related Resources =====
 +
 +  * Jacob Lamb's paper referenced above has a python deskew implementation: https://doi.org/10.1364/BOE.479977
 +  * Talley Lambert's LLSpy for lattice data includes deskew capabilities: https://github.com/tlambert03/LLSpy
 +  * Volker Hilsenstein's lls_dd for lattice data includes deskew capabilities: https://github.com/VolkerH/Lattice_Lightsheet_Deskew_Deconv
 +  * Talley Lambert's napari-ndtiff includes deskew capabilities: https://napari-hub.org/plugins/napari-ndtiffs.html
 +  * Stephan Preibisch's BigDataViewer in FIJI includes the ability to specify affine transforms including to deskew, see an [[software:fiji_mvr|example script for diSPIM data]]
  
  
  

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